News of BESEL

Tianhua Zhai joined BESEL as a visiting scholar, May-2018
Welcome. 

Xianhua Li got the Outstanding PhD Graudate Award in College of Engineering, May-2018
Xianhua finished her PhD research "Scale-Up Study of Bioreactors Using 3D Computational Fluid Dynamics Modeling". 

Fangyuan (Betty) Zhang joined BESEL as a Ph.D. student, January-2018
Welcome. 

Brittany Macshane joined BESEL as a MS student, September-2017
Welcome. 

Brendan Gorman and Ryan Searcy received Villanova Undergraduate Research Fellowship (VURF), June-2017
Brendan's project is "Design of Wetland Microbial Fuel Cell", while Ryan's project is "Full Body Cholesterol Modelling and Therapeutic Options"

Brooks Hopkins, and JamesBrooks Hopkins and James Reynolds joined BESEL as PhD students, August-2017
Brooks and James are part-time students. Welcome.  Brooks Hopkins, and James

Dr. Huang was invited to give a talk of his inverted-classroom approaches to educate college and high-school students with MATLAB, May-2017
CAST is the largest professional community in process systems engineering of chemical engineering in USA. Dr. Huang gave a presentation  on "Inverted-classroom Approaches to Educate Undergraduate and High-school Students MATLAB in Process Control and Modeling".  The following is the link of  his talk.
https://www.youtube.com/watch?v=YCQt2nnM1mA&feature=youtu.be

Robert Ferrari, Jaclyn Guglielmi and Xianhua Li won the 1st prize in 2017 Sigma Xi Student Research Symposium, April-2017
The team’s research focused on the high demand for cost-effective methods for converting the chemical energy in wastewater into bioenergy. MFCs are capable of producing electricity from wastewater under ambient conditions through the biodegradation of organic compounds by exoelectrogenic microorganisms. One of the biggest challenges for the practical implementation of MFCs in wastewater treatment plants, however, is to successfully scale up MFCs. This study investigated the performance and scalability of MFCs through a combined experimental and computational approach. More detail can be found in the following webpage:
http://www1.villanova.edu/villanova/engineering/newsevents/newsarchives/2017/studentsAlumni/SigmaXi.html
http://www.csc.villanova.edu/~sigmaxi/

Dr. Huang and his colleagues were recognized for an outstanding paper, Aug-2016
A team of Villanova University Chemical Engineering faculty have been recognized with the American Society for Engineering Education's (ASEE) Martin Award. “Preparation of Biology Review and Virtual Experiment/Training Videos to Enhance Learning in Biochemical Engineering Courses” was selected as the outstanding Chemical Engineering paper presented at the 2015 ASEE annual conference. A commemorative plaque will be presented at the 2016 ASEE Meeting in June in New Orleans.
https://www1.villanova.edu/villanova/engineering/newsevents/newsarchives/2016/facResearch/cheFaculty.html

Robert Hanes joined BESEL as a part-time PhD student, Aug-2016
Robert will study the metabolism of exoelectrogenic microorganisms in the biofilm of microbial fuel cells. Welcome.  

Xianhua Li finished a CFD project funded by Janssen Pharmaceuticals, July-2016
With the help of Drs. Kelly and Huang, Xianhua Li developed computational fluid dynamics (CFD) platform to study optimal operation parameters of biorectors Ambr15 and Ambr250.  

Xianhua Li and Nick Ribaudo's first paper on identifying malfunctioned components in signal transduction pathways from artificial clinical data was accepted by the journal "BioMed Research International", Oct-2015
We proposed a kinetic-model based approach to infer the malfunctioned reactions/molecules by quantifying the similarity between the profiles shown in the clinical data and the output profiles predicted from the model in which certain reactions/molecules are malfunctioned. This is Xianhua's first journal paper. Congratulations.  

Nick Ribaudo and Dr. Huang gave poster presentations in FOSBE 2015 conference, Aug-2015
Nick introduced the approach developed by us to study the uncertainty in the metabolic networks on microbial biomass growth rate, while Dr. Huang's talk was related to the pertubation in microbial metaobilsm triggered by antibiotics. FOSBE conference is one of the best professional conferences in systems biology.

Zhaobin Xu graduated as the first Ph.D. of BESEL, May-2015
Congratulations Nick. He found his first job as a postdoctoral researcher at Tsinghua University in Beijing, the top 1 engineering school in China

Nick Ribaudo got the Villanova Undergraduate Research Fellows (VURF) 2015, Apr-2015
Congratulations Nick. He did research on developing a Fluent-based model to simulate 3D microbial fuel cells.

Zhaobin Xu's paper on the influence of environmental nutrients on biofilm formation was accepted by the journal "BioMed Research International", Mar-2015
We proposed the first systems-biology approach to quantify P. aeruginosa biofilm formation upon the change of nutrient availability of amino acids, ferrous ions, sulfate, and phosphate, in the environment.  BioMed Research International is an open-access journal with an impact factor of 2.706.

Brett Davis joined BESEL as a MS student, Jan-2015
Welcome Brett.

Zhaobin Xu's paper on modeling the kinetics of acute phase proteins was published in the journal "Processes", Jan-2015
We developed this first comprehensive model to predict the dynamics of acute phase protein expression in IL-6-stimulated HepG2 cells (a human hepatoma cell line). The model was used as an in-silico platform for screenig potential drug targets to regulate the secretion of haptoglobin, fibrinogen, and albumin. We got invited to contribute this paper to a special issue in Systems Biololgy, i.e., Modeling and Analysis of Signal Transduction Networks, published in the jounal Processes, a new open-access journal.

Xueer Chen graduated as a MS student, Dec-2014
Xueer finished her thesis titled "Modeling Microbial Fuel Cell in FLUENT with Biofilm Thickness Features". Congratulations. 

Chenyao Zhang's paper on modeling MDC was publised in  Environmental Science & Technology,  Nov-2014
Our paper titled "A Mathematic Model of Dynamic Behavior of Microbial Desalination Cells" is published in the journal Environmental Science & Technology, the No.1 journal in environmental field and the area of bioelectrochemical systems with an impact factor of 5.481. The paper is based on Chenyao’s senior research project. She is the co-first author of the paper. The major contribution of this paper is that we develop the first mathematical model for microbial desalination cells ( MDCs) in which electricigen bacteria produce electricity from wastewater and the produced electricity in turn removes the salt from saline/sea water.

Xianhua Li joined BESEL as a PhD student, Aug-2014
Welcome. 

Dr. Huang organized and Chaired one section in IFAC 2014, South Africa, Aug-2014
Dr. Huang organized and chaired the section "Modeling and Analysis of Biological Networks" in IFAC 2014 World Congress Conference. He gave a talk titled "Modeling Framework for Investigating the Influence of Amino Acids on the Planktonic-Biofilm Transition of Pseudomonas Aeruginosa". IFAC conference is one of the top international conferences in process control and modeling. 

Dr. Huang was selected as an Outstanding Reviewer for the journal Automatica (2012-2013), Aug-2014
Automatica is the most prestigious journal in process control and modeling. Every year Automatica identifies around 20 names (from a pool of about 2000 reviewers) as outstanding reviewers for the one-year period July 1 - June 30, just preceding the selection. The selection is done following a nomination process that involves the Editors and Associate Editors of Automatica, and is based on outstanding performance an individual shows as a reviewer, consistently during the indicated period.   Dr. Huang was selected as an outstanding reviewer for Automatica for 2013, covering the review period July 1, 2012, to June 30, 2013. 

Kilho Lee's paper accepted by Chemical Engineering Education, Aug-2014
Kilho's paper titled "MATLAB Based Teaching Modules in Biochemical Engineering" was accepted by Chemical Engineering Education. In this paper, we showed a teaching module for solving and analyzing ODE models developed in the field of Systems Biology. Interactive teaching strategies were tried and the effectiveness of these strategies was summarized. The MATLAB programs along with the teaching module can be downloaded here

Clement Ekaputra, a high-school junior, designed PID controllers for microbial fuel cells in BESEL, summer 2014
Clement Ekaputra, a 16 year old senior at Great Valley High School in Malvern, PA, used MATLAB Simulink to model and control the processes within microbial fuel cells. He presented a poster in a symposium for senior college students to present their summer research projects at Villanova University. Based on his research result, a manuscript was submitted to ASEE 2015 to share our experience for educating high school students with mathematical modeling skills. Charlotte Eberle received Villanova Undergraduate Research Fellowship (VURF), Apr-2014

Charlotte received the VURF award and conducted research on developing a Fluent-based platform to simulate the dynamics of microbial fuel cells.

Kilho Lee graduated as a master student, May-2013
Kilho finished his thesis "Systems Biology Approach to Quantify the Metabolism of Escherichia Coli for Generating 3-Hydroxypropionic Acid from Glycerol". Congratulations. 

Dr. Huang organized and chaired one section in Metabolomics  2013 conference, Apr-2013
Dr. Huang was in the conference organizer committee for Metabolomics 2013 in Chicago IL. He also chaired the Systems Biology section. 

Zhaobin Xu's paper was accepted by PLoS One, Jan-2013
Zhaobin's paper titled "A Systems-Level Approach for Investigating Pseudomonas aeruginosa Biofilm Formation" was accepted by PLoS One, one of the top journal in Systems Biology with an impact factor 4.02. 

Kilho Lee and Xueer Chen joined BESEL as master students, Aug-2012
Welcome.

Dr. Huang joined IFAC Policy Committee, May-2012
Dr. Huang was selected to serve a three-year term on the policy committee of the International Federation of Automatic Control (IFAC). There are only eight faculty members worldwide serving on this committee and Dr. Huang is one of three U.S. representatives.

Kyle Brundin received Villanova Undergraduate Research Fellowship (VURF), Apr-2012
Kyle received the VURF award and conducted research on engineering E.coli to produce hydrogen from glycerol obtained from the waste stream.

Zhaobin Xu joined BESEL as a PhD student, Aug-2011
Zhaobin joined BESEL as a PhD student. Welcome. 

Dr. Huang joined Villanova and set up BESEL, Aug-2011
Dr. Huang joined Villanova University as a tenured-track Assistant Professor. He is the founder of BESEL